rs27826312 SNP Detail

Summary

• ID
  rs27826312
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:43981496 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCTC TGGGATCTGA TGACCTTCTG
  Y
  TTCCGGTAAA TGTCCCAGGA AGTGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38003631	NES09461218	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	T	C		T	C	C	C		T
ss321099687	CHEV_4_43994368	CHEVERUD	SCREENING_POP	f	SNP										C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27826312					SNP	C	C	C	C	C	C	T	T	C	C	T	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38003631	NES09461218	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:43981496 () rs orientation: forward

Symbol	Name	Function Class
Ccin	calicin	1987 bp upstream
Cpgi14203	CpG island 14203	950 bp proximal
Rr398234	regulatory region 398234	997 bp upstream
Rr591125	regulatory region 591125	1254 bp distal
Rr591126	regulatory region 591126	576 bp proximal
Rr591127	regulatory region 591127	1073 bp proximal
Tssr37010	transcription start site region 37010	1977 bp upstream
Tssr37011	transcription start site region 37011	2000 bp upstream