rs27826308 SNP Detail

Summary

• ID
  rs27826308
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:43982261 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAAACAAAC AAACTTTAAA
  TTACCAAGTT CCTAGATAAG GAAAAGGCTA GGTGTGGGAT GGAAAGATGA ATGAGAATCC
  AAGCCAGCAA GAGGGCTGGA GAGTGGTGGG TATGGAGCTG ACAGTCACTC TGGGAGGGGC
  GTTCAGGAGG ACCAGAAGGT CTGGAGTGAG GCTTGGAGCC CACAGTGGAG ATGGGGTCTG
  Y
  AGTCAGGTCC TCCTGACCAG TACAAGTGAC CATATGGCAC GGTTCTTCCT AAGAGGTCCC
  AGGGTGGCTT TGGTCATACA CCATTGCCGG GCTCTGTCCA CATCTGTAAA ATGAGAACAG
  GTGTGGGTCT GCCACACTGT GAGCCCCGGG TCCAGACGTA TGAGTTTCAG AGTCGCTCCT
  ACACAAAGGA GCCCTAGGCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38003627	NES09461170	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27826308					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38003627	NES09461170	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:43982261 () rs orientation: forward

Symbol	Name	Function Class
Ccin	calicin	1222 bp upstream
Rr398234	regulatory region 398234	232 bp upstream
Rr591126	regulatory region 591126	within coordinates
Rr591127	regulatory region 591127	308 bp proximal
Tssr37010	transcription start site region 37010	1212 bp upstream
Tssr37011	transcription start site region 37011	1235 bp upstream