rs27826304 SNP Detail

Summary

• ID
  rs27826304
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:43982430 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCCG GGTCCAGACG TATGAGTTTC
  R
  GAGTCGCTCC TACACAAAGG AGCCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38003623	NES09461174	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A		G	G	G	A		G	A	A	G		G
ss45621272	mCV23628791	ABI	CRAMUS_MOUSE	f	SNP		A	A					A		G
ss146245237	ENSMUSSNP761376	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A							G
ss321099694	CHEV_4_43995302	CHEVERUD	SCREENING_POP	f	SNP													A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27826304					SNP	A	A	A	A	A	A	A	A	G	G	G	A	A	G	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38003623	NES09461174	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:43982430 () rs orientation: forward

Symbol	Name	Function Class
Ccin	calicin	1053 bp upstream
Cpgi14203	CpG island 14203	16 bp proximal
Cpgi14204	CpG island 14204	1252 bp proximal
Rr398234	regulatory region 398234	63 bp upstream
Rr591126	regulatory region 591126	within coordinates
Rr591127	regulatory region 591127	139 bp proximal
Tssr37010	transcription start site region 37010	1043 bp upstream
Tssr37011	transcription start site region 37011	1066 bp upstream