rs27826302 SNP Detail

Summary

• ID
  rs27826302
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:43982555 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTCCACAT CTGTAAAATG
  AGAACAGGTG TGGGTCTGCC ACACTGTGAG CCCCGGGTCC AGACGTATGA GTTTCAGAGT
  CGCTCCTACA CAAAGGAGCC CTAGGCGGGA CAAAGCAGGC AGAAAGGGAC GCCCCGGGGC
  GGGTGAGTTT CCTCTCTACG CCATTGGAGA AGCTGAGCAC GGAGGCGGCG TGCTTCTGGC
  Y
  AGGAGGTGAC CCTGCAGCGC CACCGTGCGG CCGAAGCAGG CTCCTATAAC CCGTCGAGGG
  CTTCGGGGAT GCCCACAGCT GTGGTTATAT CAACTAAGAA ACAAGAACTG GCATTTATTG
  GAACGTTTGC TGTAAGCTAA GCGCTGTGCC TGCTGCACTT TGAAGCGAGT ATTCTCATCT
  CACAGAAGAG GAATCTGAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38003621	NES09461176	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	C	C	C	C	T		C	T	C	C		C
ss321099696	CHEV_4_43995427	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27826302					SNP	C	C	T	C	C	C	C	C	C	T	T	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38003621	NES09461176	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:43982555 () rs orientation: forward

Symbol	Name	Function Class
Ccin	calicin	928 bp upstream
Rr398234	regulatory region 398234	within coordinates
Rr591126	regulatory region 591126	within coordinates
Rr591127	regulatory region 591127	14 bp proximal
Tssr37010	transcription start site region 37010	918 bp upstream
Tssr37011	transcription start site region 37011	941 bp upstream