rs27826298 SNP Detail

Summary

• ID
  rs27826298
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:43983094 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCAAGTCC TCCCATCTTC
  CTAGGGCTGG CTGGCCCCTC CATTTCTGCT CCAGTGAGTG TCACCCACTT CTCCATGAAA
  ACTGTATTCT GACTACAGAG ATCAGAAGCC AGAGGGTTTG TCTTCTCAGA CGTCCAGGAA
  CCTTGGTAGA AAAAAGGGCC TTCAGGGCCT AAGAATTGAA CCATGAAAAC TGTCTGGTCC
  S
  CACTTCCTGA AGGGGTGAAA GGGTTGTAAC GCCCCACACT GTGGGAGTTC CAGGTTTGCT
  CTGCCTCTAA CTGCCTCTGT GACAGGGGGA GTCCTTCCTC AGCAGGACTT CAGCCTTCTG
  GTTAAAAGGG AGGCTTCTAG ATCATGGTAA CCTCTCCTCC CACCCTAAAT TTTCCCTCTC
  CACAGCTGCT CTCTGCCCCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38003617	NES09461129	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27826298					SNP	C	C	C	C	C	C	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38003617	NES09461129	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:43983094 () rs orientation: forward

Symbol	Name	Function Class
Ccin	calicin	389 bp upstream
Cpgi14203	CpG island 14203	471 bp distal
Cpgi14204	CpG island 14204	588 bp proximal
Rr398234	regulatory region 398234	300 bp downstream
Rr591126	regulatory region 591126	212 bp distal
Rr591127	regulatory region 591127	504 bp distal
Tssr37010	transcription start site region 37010	379 bp upstream
Tssr37011	transcription start site region 37011	402 bp upstream