rs27826296 SNP Detail

Summary

• ID
  rs27826296
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:43983810 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCACC GATGAACTCT ACATCACCAT
  Y
  GACCCCAACT ACCTGAGCCC AGCCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38003615	NES09461083	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C		T	T	T	C		T		C	C	T		T
ss45639939	mCV23628771	ABI	CRAMUS_MOUSE	f	SNP		C	C			C		T
ss146245256	ENSMUSSNP477005	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C					T					T
ss321099701	CHEV_4_43996682	CHEVERUD	SCREENING_POP	f	SNP											C						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27826296					SNP	C	C	C	C	C	C	T	T	T	C	C	T	T	C	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38003615	NES09461083	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:43983810 () rs orientation: forward

Symbol	Name	Function Class
Ccin	calicin	Coding-Synonymous
Cpgi14203	CpG island 14203	1187 bp distal
Cpgi14204	CpG island 14204	within coordinates
Rr398234	regulatory region 398234	1016 bp downstream
Rr591126	regulatory region 591126	928 bp distal
Rr591127	regulatory region 591127	1220 bp distal
Tssr37010	transcription start site region 37010	319 bp downstream
Tssr37011	transcription start site region 37011	287 bp downstream