rs27826294 SNP Detail

Summary

• ID
  rs27826294
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:43984294 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGCTCTAT GCACTTCATG
  CGCTGCCCAC CCGTCATCTT CGGTCGCCTG CTCCGGGATG AAAACCTCCA CGTGCTCAAC
  GAGGACCAGG CGCTCAGCGC ACTCATCAGT TGGGTGTACT TCCGGAAGGA GGAGCGGGAA
  AAATACTTCA AGAAGTTCTT CAATTACATC AATCTCAATG CGGTCTCCAA CAAGACGCTG
  R
  TGTTTGCCAG CAACAAGCTG GTTGGCTTGG AGAACAACTC TGCCCACGCG ACCTTGATCG
  AAAGTGTCCT GATGGACCGC AAGCAGGAGC GCCCGTGCAG CCTGCTGAGC TACCAGCGGA
  AAGGGGCCCT GCTTGACTCG GTGGTCATCC TGGGTGGCCA GAAGGCCCAC GGTAAGTTCA
  ACGATGGGGT GTTTGCCTAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38003613	NES09461085	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27826294					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38003613	NES09461085	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:43984294 () rs orientation: forward

Symbol	Name	Function Class
Ccin	calicin	Coding-NonSynonymous
Cpgi14203	CpG island 14203	1671 bp distal
Cpgi14204	CpG island 14204	within coordinates
Rr398234	regulatory region 398234	1500 bp downstream
Rr591126	regulatory region 591126	1412 bp distal
Rr591127	regulatory region 591127	1704 bp distal
Tssr37010	transcription start site region 37010	803 bp downstream
Tssr37011	transcription start site region 37011	771 bp downstream