rs27818466 SNP Detail

Summary

• ID
  rs27818466
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:48480008 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGGAAAGC AGAGGCAGGT
  GGATTTCTGA GTTTGAGGTC AGCCTGGTCT ACAGAGTGAG TTCCAGGGAA GCCAGGGCTA
  TACAGAGAAA CCCTGTCTCA AAAATAAATA AATAAATAAA TAAATAACAA AAAAGAATGG
  TACACAGTTA ACTGATGACA TCATGAAGTC TTGTCATGGT GCTGTTAATT CTCTTACTTC
  Y
  GATGCCATTT ATGATTCAGT CTCATAAACA GAAAAAAACC TGTGTTACTA AGAGTTCAGG
  TTTACTTGAA CTTTAAACAA CTTTGACATA ACTTCAGACT CATGACCTGT AGAACTATAA
  GATAACAAAT GGTTATTATC CTAAGTCTCT GTGTTCACAA AAGCTTGTCA TACCAGCAGC
  AATGAAAAAA CAGATATTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37985588	NES09446796	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	T	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27818466					SNP	C	C	C	C	C	T	C	C	C	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37985588	NES09446796	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:48480008 () rs orientation: forward

Symbol	Name	Function Class
Rr591981	regulatory region 591981	1378 bp proximal
Rr591982	regulatory region 591982	1493 bp proximal