rs27818465 SNP Detail

Summary

• ID
  rs27818465
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:48480057 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACAGAGTGA GTTCCAGGGA
  AGCCAGGGCT ATACAGAGAA ACCCTGTCTC AAAAATAAAT AAATAAATAA ATAAATAACA
  AAAAAGAATG GTACACAGTT AACTGATGAC ATCATGAAGT CTTGTCATGG TGCTGTTAAT
  TCTCTTACTT CCGATGCCAT TTATGATTCA GTCTCATAAA CAGAAAAAAA CCTGTGTTAC
  W
  AAGAGTTCAG GTTTACTTGA ACTTTAAACA ACTTTGACAT AACTTCAGAC TCATGACCTG
  TAGAACTATA AGATAACAAA TGGTTATTAT CCTAAGTCTC TGTGTTCACA AAAGCTTGTC
  ATACCAGCAG CAATGAAAAA ACAGATATTT TTGCTTTCTT CCAAATTGGG CACCAGTCAC
  TGCCAAAGGG CTTTCCACAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37985587	NES09446797	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	A	T	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27818465					SNP	T	T	T	T	T	T	T	A	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37985587	NES09446797	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:48480057 () rs orientation: forward

Symbol	Name	Function Class
Rr591981	regulatory region 591981	1329 bp proximal
Rr591982	regulatory region 591982	1444 bp proximal