rs27818462 SNP Detail

Summary

• ID
  rs27818462
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:48480246 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTGTGTTA CTAAGAGTTC
  AGGTTTACTT GAACTTTAAA CAACTTTGAC ATAACTTCAG ACTCATGACC TGTAGAACTA
  TAAGATAACA AATGGTTATT ATCCTAAGTC TCTGTGTTCA CAAAAGCTTG TCATACCAGC
  AGCAATGAAA AAACAGATAT TTTTGCTTTC TTCCAAATTG GGCACCAGTC ACTGCCAAAG
  K
  GCTTTCCACA AAGAATGCTA CAGTAGCTCC CAAATCTGTA GTAACCTGCA ATGCCACCTT
  GTAAATCCAA GGCCAACCTT GGCTACATAG CCAAGTTGTA CTCTGGGCTG CATAATGAGA
  TTCTGTCTCA AAACAACAAA CAAACAAGAA TCAAAACAAG GGCTGGAGAG ATGGCTCAGT
  GGTTAAGAGC ACTGACTGCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37985584	NES09446777	PERLEGEN	MM_PANEL2	f	SNP	T		G	G	G	G	G		G	G	G	T	G	G	T	G	T
ss45671508	mCV22982181	ABI	CRAMUS_MOUSE	f	SNP		T	G					G
ss146277828	ENSMUSSNP2469681	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27818462					SNP	T	T	G	G	G	G	G	G	G	G	G	T	G	G	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37985584	NES09446777	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:48480246 () rs orientation: forward

Symbol	Name	Function Class
Rr591981	regulatory region 591981	1140 bp proximal
Rr591982	regulatory region 591982	1255 bp proximal