rs27818459 SNP Detail

Summary

• ID
  rs27818459
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:48480809 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAAGAAAAT ACAAACCAAA
  GAGAGGGAAA AAAGAGAGAA GGGGGAAAAT AAATATAATA GTTTTAGAAA GAATCTTTGG
  ATGGCTGGTC AGAAAGTCAT CCAAGCAACT CAAGGTAAAA AGCCACATTG TAATAACATG
  AGAGGACACC TCATGGTACA CCAGGCACAA ACAATGAACT TGGTCATTCC CCAAAGGAAA
  R
  GGGATCAGAA AGTATTTCTG GGAAAGGTTT CCCTTGTGGC TTAAAGCAGG AGCAGAGTGA
  GAATAAACAT AAAAATAGAT AATGTCAACA AATTAGCTAA AATCAAATGC TCCATTTCCA
  CTCCACTCTG CGTATTCGTG GCTCATTTGG TAAAGCCCTC TAAGTATCTA GTGGTATAGA
  AGCCATCTAA TACAAAAATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37985581	NES09446748	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27818459					SNP	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37985581	NES09446748	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:48480809 () rs orientation: forward

Symbol	Name	Function Class
Rr591981	regulatory region 591981	577 bp proximal
Rr591982	regulatory region 591982	692 bp proximal