rs27818455 SNP Detail

Summary

• ID
  rs27818455
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:48481577 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTAGAGAAA CAATGGATGG
  ACGGAGAGCA CTTTCTGTGT CCCACGGTGG TGAGCCACTG ACTTCCTCAT TCTCAAGTGG
  AAGGAATTGT ACCTAAACTC AGCTTCCAAC AGGCTGTGCC TGAGTCCACC AACAGGTGGC
  ATCCACTCTG AGTCTTTTCC TAAACCTTGA GGGTTACTCT CACTGTTACT AATCAAAATG
  R
  AGCAGCAGGG TCTCATTGTC AGAGAGCAAT TCTGGCTCAA GCACAGCTCT CCACAGAAAG
  TCAAAGAATG GATGAACCAT GAACCTGCTG CCTATTGTCA CCCATGTCCA TGCAGTGACA
  ATTGCAGGTG TCTGTCATGA GGGCCTTGAG TCACATCTAA GGGCAGTTTA GATAGTTCAT
  GTAATATATA TTTTTAGATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37985577	NES09446714	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	A	A		G	A	A	G	G	A	G	G	G
ss45619116	mCV22982172	ABI	CRAMUS_MOUSE	f	SNP		G	A					A		A
ss146277840	ENSMUSSNP3588918	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27818455					SNP	G	G	A	A	A	A	A	A	G	A	A	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37985577	NES09446714	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:48481577 () rs orientation: forward

Symbol	Name	Function Class
Rr591981	regulatory region 591981	within coordinates
Rr591982	regulatory region 591982	55 bp distal