rs27818445 SNP Detail

Summary

• ID
  rs27818445
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:48482957 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATTAATGT TTGACTTGCA
  AAGAAAGTTT GAAGAAATTA TAAAAGTGAA ACAAAGACAA TATTGGGACC CTAAGAAAGG
  AAAAATTTTT TGAAGTTATG AAAGAAGCTT TGCACAGCAT TTGAGAGTGG CCCCTGGTCT
  CCTTTAGATA TGTAAAAGAA AGTATAAAAT GCATAAAATT ATTTATTAGT AAAACTAAGT
  S
  AAAACACTGG GACTCTTAGG AGAGTCATTG AGTGCAATGT GCAGAAGCAG AAAGCTAGCA
  GAATTGCTGA GTTAAGGGCT AACCTGATTC TTTCTGGCCA TTGCCTGACT GCTTTACCCA
  TGTCATTTAT CATTAGAGCC TCACAGGAAA ATGTATGTAG CTGATCTTAG AGCTCTGAGC
  TCTGATGTAC AGTAAGTCAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37985567	NES09446660	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	G	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27818445					SNP	C	C	C	C	C	C	C	C	C	G	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37985567	NES09446660	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:48482957 () rs orientation: forward

Symbol	Name	Function Class
Rr591981	regulatory region 591981	1341 bp distal
Rr591982	regulatory region 591982	1435 bp distal