rs27810209 SNP Detail

Summary

• ID
  rs27810209
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:53336147 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATCTCAGTC TGGGGAAATA
  AAAAATGACA AGATGAGGCT ACTGAGACAG GAAAGAATGC AAGGAGGAGA GGACTGGAAA
  CAAGAAAGGT GTCTGGCTAC AGTGTAGCAT GTGTCTGGCT ACAGTGTAGC ATTACCGACA
  TTAGGAAACT AAAGAAAATG ATGTCAGGGT ATGTGGGGGT CTCACTGTCA GTCAGAGGAT
  K
  CTGGTCTTGA CATGAAGGCA AATATGATGG CAAGATTTGG TAGGATCTTG CCTAGAGGAG
  AGTCAAGAGG AAAATTATTA GCTATGCATT CCTTACAGAG AACAGAAAAG AGAACACATA
  TCCTCATTTT ACACAAAAGA TTCAAGAAAG GGTGACTCTG GCAAATATAG TATCTATTCT
  GTAAAGAATA CCATTGGTGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37971042	NES09422282	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27810209					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37971042	NES09422282	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:53336147 () rs orientation: forward

Symbol	Name	Function Class
Gm70129	predicted gene, 70129	1052 bp downstream
Rr592236	regulatory region 592236	1647 bp proximal