rs27810205 SNP Detail

Summary

• ID
  rs27810205
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:53336678 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATAACATAT GAACACCTAG
  AATAAATCTA CTACAAAGCA CTGCCCTTTG TATTTACCAA CATATCTCTT ACTAGGTTTT
  GTTTGAGTGA TAAACTCTTA TGATGTTTAA AATATTATTT CATTCACTGA AAATAAGTTT
  ATATGCATCT TTCTTAGACT TTTATCCTGT AGCTCAAATA AGCATCTTTC TACCCCTGTC
  S
  TTTGGATCAG ATATTTAGTT CTAAATAGTT ATATTTGGGA AAAATCACAT TCTCTATAGA
  AATTAAAATT TTCTAGGTGT TTTGCAACAA ATAAATCAAA GCTAAAAGAA CTTTACTCCA
  AAAGAAATAC CTTTTTAATG AAAATTTATT AGCTCTGTAT AGTTGTAATT GAAACCTGTA
  TTTCCAGAGC TAGAAAACCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37971038	NES09422289	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	G	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27810205					SNP	C	C	C	C	C	C	G	C	C	C	G	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37971038	NES09422289	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:53336678 () rs orientation: forward

Symbol	Name	Function Class
Gm70129	predicted gene, 70129	1583 bp downstream
Rr376485	regulatory region 376485	1760 bp upstream
Rr592236	regulatory region 592236	1116 bp proximal