rs27810200 SNP Detail

Summary

• ID
  rs27810200
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:53338469 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGGTTCAGT GAAAAGAGCC CCTTCCTACA TTAAAAAAAT
  AAAAAGAAAG AAAAGAAAAA GTCGCTTCCC ATATCTCAGT GCAACTTCAG GCCTCACATA
  Y
  TTTGTCCTTG ATCCCGGGAG GAATCTTGTT AAGTGTTCTT CAAAGTGCAA AAAGAACTAA
  TTGCATGTCC CTCTTTCTCC CTGATCATTA AATAAAGAC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
ss37971033	NES09422185	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C		C	C	T
ss321117461	CHEV_4_53351341	CHEVERUD	SCREENING_POP	f	SNP							C				T
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
rs27810200					SNP	C	C	C	C	T	C	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37971033	NES09422185	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:53338469 () rs orientation: forward

Symbol	Name	Function Class
Rr376485	regulatory region 376485	within coordinates
Rr592236	regulatory region 592236	278 bp distal
Rr592237	regulatory region 592237	746 bp proximal
Rr592238	regulatory region 592238	1240 bp proximal
Tssr37294	transcription start site region 37294	1648 bp upstream
Tssr41768	transcription start site region 41768	1348 bp downstream