rs27810199 SNP Detail

Summary

• ID
  rs27810199
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:53338624 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAAGTCGC TTCCCATATC
  TCAGTGCAAC TTCAGGCCTC ACATACTTTG TCCTTGATCC CGGGAGGAAT CTTGTTAAGT
  GTTCTTCAAA GTGCAAAAAG AACTAATTGC ATGTCCCTCT TTCTCCCTGA TCATTAAATA
  AAGACACTAG GAAGCCAAAC ACAGTTTACT TCACCTGGAA TACTTCTCAA CTAGGAATCG
  M
  ATTCCCTTGA ACTGTTGTCA CTCTCTGAGG TGACCTTCTA CCCATCCTCC AAGCAAACTG
  TCAGTGAAGG GCTGGAGAGA TGACAAGGCT AACAAAGCTG AGTTTTATTC CCCAGCACCC
  GTGTGAATAC TGGATGTGGA GATGCACCTA TAAGACAAGG GCTGGGGAGA CAGAGACTGA
  GAGAAACAGA AAACCCAAAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	C3H/HeJ	DBA/2J	MOLF/EiJ	PWD/PhJ
ss37971032	NES09422186	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	C3H/HeJ	DBA/2J	MOLF/EiJ	PWD/PhJ
rs27810199					SNP	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37971032	NES09422186	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:53338624 () rs orientation: forward

Symbol	Name	Function Class
Rr376485	regulatory region 376485	within coordinates
Rr592236	regulatory region 592236	433 bp distal
Rr592237	regulatory region 592237	591 bp proximal
Rr592238	regulatory region 592238	1085 bp proximal
Tssr37294	transcription start site region 37294	1493 bp upstream
Tssr41768	transcription start site region 41768	1193 bp downstream