rs27808927 SNP Detail

Summary

• ID
  rs27808927
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:52301315 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTAGCTAG CTACCAAGCC
  TACCCTAATC AGGGAATGCC AGATCCCACT GGGAGACCTT ACCTCAAAAA CAAAAGCAAA
  GATGAAAGAC TCATGAGAAA GACCACCACC AGATGCTGAC CTCTGTCTTC TATATGCACA
  TGCTCATATG TACATGAATA TACACACACA AAGACTATGT AACTTAAAGA TGAACTTTAA
  K
  CTATCCTAAT CAAAAAGAAG TGTGTTCTAG AGGAACCCCC TGCTATGAGA ATTGCAGTGA
  TAACGAGCAT AACAAAACTG TAAGATTCCA AAGGATACCT ATGAGCTTAG AACATATCTA
  AATAGCAATT CCCTAAGAAA GCAAGACCAG GATGGACCTC TTTCATGGAT AGGTGCTGTG
  CTAATGCCCA AACACCTGCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37975274	NES09434395	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	G	T	T	T
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27808927					SNP	T	T	T	T	T	G	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37975274	NES09434395	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:52301315 () rs orientation: forward

Symbol	Name	Function Class
Rr592143	regulatory region 592143	1813 bp distal
Rr592144	regulatory region 592144	1894 bp distal
Rr592145	regulatory region 592145	434 bp proximal
Rr592146	regulatory region 592146	518 bp proximal