rs27808921 SNP Detail

Summary

• ID
  rs27808921
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:52302242 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAACTGAAT AGTCCAGAGG
  GGTGAACTTG CCCTGCTTCC GTCCAAGAGC CTCCACTGTT AGGGAGCTAA ACTATAAAAG
  CTGTGTTAAT CTAAGAGCCT GGCAGGGTAG AGTGCTGAAC TCTACCTGTA TCTGTCCAGG
  AACCCCAGCT CTCTAGAGTA GTGAGCTCCT CCTACATCCA ACCAAAAGCC TGGATGGTCC
  K
  CAGAGGTGAA TGCTGCTACA TCCCAATACA TCTGCTTCTC CTGATCATCT TGTAAAGTAA
  ATGCCACTAA CCTCACGGGA GCCAAAACAA AAATACGCTC AAGTAAAGTA GATTTGAGAG
  CTCTTGACTG TGTAAACTTT ACCATTCCTA AGCTTCTACA ACCCCCTGAA TAACCTCAAA
  CTATGCAATT AGGACTTTTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37975268	NES09434415	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27808921					SNP	T	T	T	T	T	T	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37975268	NES09434415	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:52302242 () rs orientation: forward

Symbol	Name	Function Class
Rr592145	regulatory region 592145	315 bp distal
Rr592146	regulatory region 592146	388 bp distal