rs27807222 SNP Detail

Summary

• ID
  rs27807222
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:32888503 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGCCTGAC TCTGGTGGAG
  GAGCTGTGTG TGTGAAGTGT GCTGTGAAGA GAGGGTAGAG GGTGTAGTGG TGACGCACAC
  CCGAGGGAAC AGACCTCCCT GTGAGGTCAG GGAGATGCCC TGCACGGAAA GGGGATTTCA
  GCAGGTACAT GATTAAACAG AATAGGCCGG ACAAAGGGGC ACTCCAGATG AAGTAAACTG
  Y
  GTGACCAAAG GCCCGGAGTG CTCACTGGAG AAGCTAGAGG ACACCTAGGA TGACAGATGA
  CAAGACTTAA CTATCCTTCC AACCAGAACG TACTCATTTG TCCCTGTGTC TCACTTTAGT
  GATTCTGCTC TCGCCTTTCT GCAGCCTAAC AGTGGCATAG CTGTGAAAGC AGAGGCTAAG
  GAAAAGATCA GACCCAATAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37955046	NES09481936	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27807222					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37955046	NES09481936	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:32888503 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ankrd6	ankyrin repeat domain 6			Intron
				Noncoding-Transcript-Variant
Gm68197	predicted gene, 68197			within coordinates
Rr376303	regulatory region 376303			1506 bp upstream
Rr590048	regulatory region 590048			615 bp proximal