rs27806851 SNP Detail

Summary

• ID
  rs27806851
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:32585354 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTGTATTC AAGACCACTC
  ATTTCAGGTA GACTCACATT CAGTGCCAAA CGCTCCCATG GAAATGATCA GACACCTATA
  TCAGAAAAGA GTGAAGGGAC TTGAACAAAA ATATATATAT ATATGGGTTT TCCTAAAGAT
  GGGTGCTAAA CTTCTACCAA ACATGTCTCT AGGGACAAAG AGTTGGCCTC CACTCGGGTC
  M
  TAACAGTGTA TTTTGGCTGT GGCAACGCTG GGATGCCCAT TCACACTCTG ACACAAGAGC
  CTGGCACTTG TCACAAATTA TCAGGAAGAT TGCAGATGCG TTTGGGAGCC TCGGGTACTC
  GTTAGACACG GTGAGCCATT CAAGGCAAGA GGGCCTGTGA GAGTTTGTTC CAGAACCAGT
  CTGATGCAAG TGCACCTCCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37956278	NES09475625	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27806851					SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37956278	NES09475625	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:32585354 () rs orientation: forward

Symbol	Name	Function Class
Bach2	BTB and CNC homology, basic leucine zipper transcription factor 2	mRNA-UTR
Rr590021	regulatory region 590021	1164 bp proximal
Rr590022	regulatory region 590022	1434 bp proximal
Rr590023	regulatory region 590023	1979 bp proximal