rs27806850 SNP Detail

Summary

• ID
  rs27806850
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:32586324 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTTGCGTC ACACTGCGGC
  ACAGACAGCC TCGAGCAATG CTTCTCTACA GACATTAGCT TGGACCCTTC CCTGCTCCCT
  GGTTAATCTG ATTAGAAATC TGAAGAATTG AACCATGCTG GTTTTAATCT TAAGTTTTTA
  AACAAAATCC CCGTTGCACA TGAGATTAGA TATCAAATAT TAGAGCCATT TCCAGTTTCA
  R
  TATTCCACTG TAGCTATGCA GCTTGTTGCC GTGGGTAAAG AACATTGTGT TTTTAACCAT
  AGATGGATCT ACAGCTACAA AAGAAGAGAT GACGAAATAG ATAAAAGGCC AGGTGTAGTG
  GCACATGCCT AGGTCCAGTT ACTCCAGAGG CTGAAGCAGG CTCACATGAA CATACAGGAT
  TACAACCAGG GTGGGAACCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37956277	NES09475628	PERLEGEN	MM_PANEL2	f	SNP		A	A	A		A	A		G
ss146162358	ENSMUSSNP5851327	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		A
ss321072248	CHEV_4_32673299	CHEVERUD	SCREENING_POP	f	SNP					G			A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27806850					SNP	G	A	A	A	G	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37956277	NES09475628	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:32586324 () rs orientation: forward

Symbol	Name	Function Class
Bach2	BTB and CNC homology, basic leucine zipper transcription factor 2	216 bp downstream
Rr398195	regulatory region 398195	1992 bp upstream
Rr590021	regulatory region 590021	194 bp proximal
Rr590022	regulatory region 590022	464 bp proximal
Rr590023	regulatory region 590023	1009 bp proximal
Rr590024	regulatory region 590024	1333 bp proximal
Rr590025	regulatory region 590025	1917 bp proximal