rs27806845 SNP Detail

Summary

• ID
  rs27806845
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:32588522 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGCA TGTTAGTTCA ACCAATACTA
  Y
  GCAACACACC GTGCATCCTG CCTTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37956272	NES09475507	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C		C	C		T
ss321072261	CHEV_4_32675497	CHEVERUD	SCREENING_POP	f	SNP					T			C
SNP Consensus Information
SNP					Consensus Type	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27806845					SNP	C	C	C	C	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37956272	NES09475507	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:32588522 () rs orientation: forward

Symbol	Name	Function Class
Rr398195	regulatory region 398195	within coordinates
Rr590021	regulatory region 590021	1453 bp distal
Rr590022	regulatory region 590022	1713 bp distal
Rr590023	regulatory region 590023	1168 bp distal
Rr590024	regulatory region 590024	661 bp distal
Rr590025	regulatory region 590025	within coordinates