rs27791909 SNP Detail

Summary

• ID
  rs27791909
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:32951913 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCACACAT GCAGGCATGC
  ATGCGCGCGC ATGTGCATGC TCTCTCTCTC TCTCTCACGC ACGCGCACAC GCACACGCGC
  ACACGCACAC ACACACACAC ACGATCTGAT GACAAATGAG TGATGGAACC TTTTGCTCAC
  AGAGGTGGAG AGGTCAGCAG GTAGAACGGT GAACATGACG CTTCGATCTT ACCTGAGGCT
  R
  GTGATAAATT TACGGTGAAG CGATTTTTTT TTTTCACACC CTCTCTGGAA TATAGCTGGG
  TTTCAAGGAG AGAACCTCCT TTTCCTTAGA GTATCTGTTT CCTTTTGCCT CCTGAAAGCT
  TCAAACAGGA GACACTCCAA AACCCCCTCC CCGCCCACCC TAGAAGAGAG TTAAGCACTT
  GATCCTCCGA AACTATTTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37954733	NES09480985	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27791909					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37954733	NES09480985	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:32951913 () rs orientation: forward

Symbol	Name	Function Class
Ankrd6	ankyrin repeat domain 6	1072 bp upstream
Cpgi14106	CpG island 14106	549 bp distal
Cpgi14107	CpG island 14107	within coordinates
Rr590062	regulatory region 590062	1098 bp distal
Rr590063	regulatory region 590063	1405 bp distal
Rr590064	regulatory region 590064	582 bp distal
Rr590065	regulatory region 590065	962 bp distal
Tssr41164	transcription start site region 41164	1047 bp upstream