rs27791908 SNP Detail

Summary

• ID
  rs27791908
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:32951926 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAATGAGTGA TGGAACCTTT TGCTCACAGA GGTGGAGAGG
  TCAGCAGGTA GAACGGTGAA CATGACGCTT CGATCTTACC TGAGGCTGGT GATAAATTTA
  Y
  GGTGAAGCGA TTTTTTTTTT TCACACCCTC TCTGGAATAT AGCTGGGTTT CAAGGAGAGA
  ACCTCCTTTT CCTTAGAGTA TCTGTTTCCT TTTGCCTCCT                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37954732	NES09480986	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27791908					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37954732	NES09480986	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:32951926 () rs orientation: forward

Symbol	Name	Function Class
Ankrd6	ankyrin repeat domain 6	1085 bp upstream
Cpgi14106	CpG island 14106	562 bp distal
Cpgi14107	CpG island 14107	within coordinates
Rr590062	regulatory region 590062	1111 bp distal
Rr590063	regulatory region 590063	1418 bp distal
Rr590064	regulatory region 590064	595 bp distal
Rr590065	regulatory region 590065	975 bp distal
Tssr41164	transcription start site region 41164	1060 bp upstream