rs27791591 SNP Detail

Summary

• ID
  rs27791591
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:55362773 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTTTCTCCT CACTCAGTAT AAATTGTCAG GAATAAGATT
  CCTGCTTTGT TTGACCATTT TCCTGTTTCC TTTTCTTCAC ATATTGCTGC ATAATATTGT
  R
  TAGTGTGTTT GGAAGGAAAC TTAACATCTG TATTAGTTAC TTTTCTGTGG CTGTGATAAA
  CACCATTTCC AAAAGCAACT TTAGAAAGTG TTTATTTTAG                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37962721	NES09410802	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	AKR/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27791591					SNP	G	G	G	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37962721	NES09410802	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:55362773 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rad23b	RAD23 homolog B, nucleotide excision repair protein			Intron
				Noncoding-Transcript-Variant
Rr592471	regulatory region 592471			1606 bp proximal
Rr592472	regulatory region 592472			1807 bp proximal