rs27791590 SNP Detail

Summary

• ID
  rs27791590
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:55363765 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CATGACAATG GATACAACTC AAGATAATAG TATTTAAATG ACTGAAGTCA GTTTCAGCAA
  TGCTGATAGT ACAGGTTTTC TCTCATTTGT GGTTTCTAAA TTTGTTGACG ATAAATCATA
  TATGTATATA GGGCATGGAA GTAGAGGTGA AGCTGTCTAA ATTTTCAAAA AAGACCGGAG
  GAAAGAGGTG TCCCAAAAGG GAAGCGGTGA GGGAATGTGT CCTAAGTGAA CTGTATGCCT
  GTATGGAAAT GTCCTAGTAC CATGTGCACT GAATACGTGC CAGTGGGGAA AAGTGAACAG
  Y
  AAATAAATGT TCTCATAAGA AGTAAGTAGT AACTTAATGT AGGGATAGGT CACAGCTGTT
  AAAGAGCTTG TAGACTGAAA AATTGGGACC TACGCTGAGG TTTTATATCA CGGGGAAGGT
  ATATTAAATT GGCTAATGAC TTGTAATTTA TGAGTTTATT GATGCTGAGA TTATTGCCTG
  AGATTTTTTT CTTTTAATGG TGGATTTTAG AACAGAGTTT TGTGATTTTG GGTTACATCA
  GAATAGCATT TAAGGAAGTG AATGTGACAC TGGCAACTGA GAGTGTTTCT AAAATGCAGT
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	MOLF/EiJ
ss37962720	NES09410720	PERLEGEN	MM_PANEL2	f	SNP		C	C	C		C	T	T
ss45703934	mCV24912361	ABI	CRAMUS_MOUSE	f	SNP	T	C			T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	MOLF/EiJ
rs27791590					SNP	T	C	C	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37962720	NES09410720	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:55363765 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rad23b	RAD23 homolog B, nucleotide excision repair protein			Intron
				Noncoding-Transcript-Variant
Rr592471	regulatory region 592471			614 bp proximal
Rr592472	regulatory region 592472			815 bp proximal