rs27791475 SNP Detail

Summary

• ID
  rs27791475
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:32682125 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCTAATCT TTGATATCGT
  CTATAGACGA ACAGTAACAG AGGCAGTTCT TAGTAATAAT TGTCATGACT AAGTCTCTGT
  GTAGTCCTTT TGTCTATGGC ACACTTTTCA GTCCTTTATC TGTGTTGCTT CCCAAACAGT
  CCTGTTGTAC AGACTCCCCA CCATGCACTT GAGAGAACTG TGAAGGCTAG AGTGGCTTTT
  K
  TCCCTTGTTA GATGCCGTAG CTGGTCCAGA ATTGAAAGCC TGTCTTGTCT TGATGTTCTG
  TGTTCTCAAC TAGTATAGTG CTGCCTTAGT CTGGGCCAAC CCCTATTGCT TTTAAGACTG
  GCGCTGTTCT TTAGATGGCA TGTATTTTAT TTCATTTCTT TGACCTGTTC CAGTGCTTGG
  TCTTGTCACC TTGTCTCACC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37955896	NES09472867	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27791475					SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37955896	NES09472867	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:32682125 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mdn1	midasin AAA ATPase 1			Intron
				Noncoding-Transcript-Variant
Rr590034	regulatory region 590034			431 bp proximal