rs27782626 SNP Detail

Summary

• ID
  rs27782626
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:49323017 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATATCATGG TCCCAAAGAG
  TGCAGACGAC ACAGTAAAAA GTAAAATGTG AAATCTCTCC CTTACCTGGT GTCTTCTGAC
  ACAAATGCAT TCAAATAGAA TGTTAGCTAT CTAAGAATTT TATAAGAGTT TTGTAATATC
  ACCACACAAT TCTCTGGTTA TTTACATAAA AACTACATGG TCTGGATCCA GCCATTATTC
  W
  TCAGTTATTC CTTCTGACAA TATAGTTTCT GCTCATAAAC TCATGACGAT GCAAAAGTCA
  CTAACGAACT CATGTTCATT GTCACGGCTG CCCTGTTTCC TATCTAACTA ACTAGCTTAA
  TGAAGTTGTC CAATGAGATT TGTTGCTCAG GTTTCCTTTT ACAAAGTCCT TGTTTCTGAC
  CTGGGATTCG TGTGCATTGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37982445	NES09426168	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27782626					SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37982445	NES09426168	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:49323017 () rs orientation: forward

Symbol	Name	Function Class
Plppr1	phospholipid phosphatase related 1	Intron
Rr592049	regulatory region 592049	460 bp distal
Rr592050	regulatory region 592050	541 bp distal