rs27779553 SNP Detail

Summary

• ID
  rs27779553
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:53422617 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTATTTTCA GACAGGATCT
  TCTCTTCCCC CAGTGCCCAG GCTGGCTTTA AACTTTCTAA ATTGCTAGAA TTAAAGACCC
  CACCAGGCCC AGCCCTAAGT GTTATTCATC TCACCACCAC CACAAAACTA GTAGTACACA
  TTAAAATAAA CGAACAAGCA AACAAACCAC AAGAACTAGA AAGAAGAGCC TTTAGAATTA
  Y
  GGAACAAACA GAATTTCTGA TGTTGGAGTT GTGAGACCAA AGTTATAAAA TGACTATACT
  TAAGACAACT GCACCTACTA ATGTTGCTGT TGTTGTTGTT GTTTTCAAAT AGCTGGGAAG
  TGAAGCATTT TAAGAAAGCC CCACAGAGAC ATCATCTATT ACTAGAGAAA AGTGAAAAGG
  AACAAAATAG CACAAAAAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37970678	NES09418032	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27779553					SNP	T	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37970678	NES09418032	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:53422617 () rs orientation: forward

Symbol	Name	Function Class
Rr592252	regulatory region 592252	1057 bp proximal