rs27779550 SNP Detail

Summary

• ID
  rs27779550
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:53423354 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTTGTAAA AACTCTGCCA
  CATTTGTTCA TTTCCTTCCA TTGTTGATGT ATTTTAGAGC CGTTCCCAGA AGTCACATCA
  TGTTGCTCTT GGAGGCAGTA TTTGAATACT GAAATGCCGG GACTTTTCTA CAACGAGCAA
  AATATACCAT GCACAAATCC CTAAGCCCAG CCTTGCCTGA TCAGGGTCAG GAAAATAAAA
  Y
  CACATTGAAG CATCTTTTCA GAAACCTGAG AAAAATGAGA GAAACTATGA CAAGAAGCCA
  TTAACTTGCT TAAGGCTCAA GGATGACTGA GTCACTTTCA GGGCCACATA GCCTCAAGTT
  TGGTATCTTT TTCCACTACT AAGCCACCAT AGTGAAGGCC CATTAATGAA TTCTGTTCAG
  AGACTTCTTA CACTTTTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37970675	NES09418039	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27779550					SNP	T	T	T	T	T	T	C	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37970675	NES09418039	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:53423354 () rs orientation: forward

Symbol	Name	Function Class
Rr592252	regulatory region 592252	320 bp proximal