rs27779543 SNP Detail

Summary

• ID
  rs27779543
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:53424469 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACACACAC ACACAGAGAG
  AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAAAGAG AGAGAGAAGG TAGCTGAACA
  TAGCAATAAG AAAAGTAACT AGAATGGAGG GAAAGACACA GTGGCTCATG TGGCTCCACC
  CATATATGTG GGAGCCAGAG GACCTCACAT TTTGGTGGGT CAAGATCTAG AACAAAAACC
  K
  TAGGCAGGTG TAGCTGGAAA GGCCTACCTA TTGTGGTCGC TGAAACCCAA GTGCAAGGTT
  CAACAACAGG CCCACACACT GAGGACAAAC TTCCCAAATA TGTGAAACTA TAGGAGATCT
  TTTAGATTAA AACCATAGCA ACTATTTTTG CTTAAATTTC CAGAAAGCCT CAGTTTATGG
  TAGCGATTGT TAGCAATTTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37970668	NES09417817	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27779543					SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37970668	NES09417817	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:53424469 () rs orientation: forward

Symbol	Name	Function Class
Rr592252	regulatory region 592252	774 bp distal