rs27779538 SNP Detail

Summary

• ID
  rs27779538
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:53425386 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGAACATGGT GCGTGTACAC ACACACACAC ACACAAAACC
  AAAACATCCA TGCACACAAA ATAATAATAA TAATAATAGT AATAATAAAT GTTTAAAAAT
  W
  CTACATCTGA TTGGGAAAAA GTAGATCTCT TTCAATATTT CTTGAATGTC TAAATGGCAG
  AAATTGGATG AACTTAAAAA AAAAGAAAGC AATTTACAG                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
ss37970663	NES09417771	PERLEGEN	MM_PANEL2	f	SNP		A	T	T	A	T	A		A	T	T
ss45683278	mCV23159893	ABI	CRAMUS_MOUSE	f	SNP	T	A
ss146319852	ENSMUSSNP4189867	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
ss321117741	CHEV_4_53438258	CHEVERUD	SCREENING_POP	f	SNP								T				A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
rs27779538					SNP	T	A	T	T	A	T	A	T	A	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37970663	NES09417771	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:53425386 () rs orientation: forward

Symbol	Name	Function Class
Rr592252	regulatory region 592252	1691 bp distal