rs27773671 SNP Detail

Summary

• ID
  rs27773671
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:33302697 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTCTGAGA GCTAAAACAA
  ACCCTTTCCC CCTTAATTGC CTTTGCCAGG GTATTTTATT TTATCACAGC AACTTGAAAA
  GCAATACACC TGCCAGTTGG GGTACCTACT AATGTATTTG AAAAGTCTGT TGATTTAAGT
  TTTTGCTTGT TCTGTTGCTA TAACTCTGTT AGGAAAAGTA TCAGCTCAGG ACCCCCAAGA
  Y
  CAAATTCTCA GCACAGAGGA CGTGGGCGAA TGGGAGGGGG TGGACAAAGA TGGACACCCA
  CAGACTGCCT CTGCTGAATG GCACAGGTGG GCTATAGACG TATAGAGCCT AGGCTACTGC
  CACATAGCAC ACACGACACA GGAAGAGGAA GACATTCAGA GACCTGTCCA GTGCCAAGCT
  ACATGGCACT GGTGGGGAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37953490	NES09475004	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27773671					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37953490	NES09475004	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:33302697 () rs orientation: forward

Symbol	Name	Function Class
Gm11934	predicted gene 11934	within coordinates
Rr376310	regulatory region 376310	within coordinates
Rr590125	regulatory region 590125	567 bp proximal