rs27772543 SNP Detail

Summary

• ID
  rs27772543
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:32534573 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAAAAATC TGCGTCTGAA
  GCTTTGTTTG GTTGGCTCTT TGTGTAAGAT AAGACCTGCC TTTCCCCAGA AACAACCTCA
  CGAAGGCGCA GACCAACAGG GTTCTTTTCC GTGGTACCAG GAGCCAGGAT TGAGTCTGGT
  CAGAAATCAC TGTCAGCTCA TCCTGGCTTG CTACCGCTGC GACTACACTC TGGTTTTTAT
  K
  ACTAACTCTC TCGGTAAAAC ATACATCCAC TCCACTTCCA CACTTCAGAT TGCGGGTGGA
  GGACATCTAC TTTCTGAAGG GCAGCTCTCA AGACAGACTT ATTGAACCTC ACAAGGCTTG
  CCAGCTATCA CGGGCTGGCA CAGTAACATG TCCCCAAAGT CCTAGCTACT TGGGAGACAG
  AGGCAGGAAG ATCACTTGAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37956562	NES09476560	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	T	G	G	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27772543					SNP	G	G	G	G	G	G	T	G	G	G	T	G	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37956562	NES09476560	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:32534573 () rs orientation: forward

Symbol	Name	Function Class
Bach2	BTB and CNC homology, basic leucine zipper transcription factor 2	Intron
Gm68183	predicted gene, 68183	1046 bp downstream
Rr1321	regulatory region 1321	1814 bp downstream
Rr590005	regulatory region 590005	1998 bp distal
Rr590006	regulatory region 590006	476 bp distal
Rr590007	regulatory region 590007	1853 bp proximal