rs27772539 SNP Detail

Summary

• ID
  rs27772539
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:32535231 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACAAGCAAT TGAAAGCTAC
  CTGATATGGG TGCTGGGAAC TAAACTCAGA TCCTATGTAG AATCCATACC CTCTTAACTG
  TTGAGCCGTC TCTCCAGTCC CTAAACGTTC CTGAAGTACT TTTGTAAACA GTGGTACCTA
  TATACCTCAA GTTTTGGTCA CACCATGACC CACTTAAAAA AAAAAAAAGA GTCACCTATG
  Y
  TTAGGTAAGC TTTATTAGCA AGGCCAGCAT GTGATAATAT AATAGTCATA ACAACCTTGC
  CTCAGCACCA TTCAGTTGGC TTCAAGGAAA GATGTTACTC AAGAGTACAG CATGGTGCAT
  GGGAACTAAG GACGCCTGGG TGTTTTCCTC CTGTAATGTA CTGAGAACCA TAGATTCTTA
  GTCTTAAAGA CATGTGACCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37956558	NES09476443	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27772539					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37956558	NES09476443	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:32535231 () rs orientation: forward

Symbol	Name	Function Class
Bach2	BTB and CNC homology, basic leucine zipper transcription factor 2	Intron
Gm68183	predicted gene, 68183	1704 bp downstream
Rr590006	regulatory region 590006	1134 bp distal
Rr590007	regulatory region 590007	1195 bp proximal