rs27761658 SNP Detail

Summary

• ID
  rs27761658
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:12628173 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCCCCTAT TTCTAATACA
  TACTTTTTCT CTAGCATGTC TGTACAAACT AAAACAAACA GAAAATAAGA GCTATACCCA
  GCACCCCCCA CCATCCCATC AGTGGGAATA GCCTTTCTAG CAGTCTAGTG AAAGGCTTCC
  TTCAAGTTCC CTTTTACTCC CTAGTGCATA AATAAGCAAG ATTCAATGTG TTTTTAATTG
  Y
  TCAAAATGTA AGCAAGACTT GGTACTGCAA GACTGCCACT ATTGCTTTGT AAATTACCTT
  TCATACAGAT TTCCTGTTTC CTCTTACCTG CTGATGTTTA AAAGAATGTA GCTCTTTGGT
  TTTTTCTTTT GTTTCTTGGA GCAAAAAATA TAAACATTAT ACTCTTAGAA TTTGGGTCCA
  GGAGTCATAG TCGAGCCTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37899386	NES08638071	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27761658					SNP	T	T	T	T	T	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37899386	NES08638071	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:12628173 () rs orientation: forward

Symbol	Name	Function Class
Gm37985	predicted gene, 37985	within coordinates
Rr589092	regulatory region 589092	436 bp distal
Rr589093	regulatory region 589093	320 bp proximal