rs27746514 SNP Detail

Summary

• ID
  rs27746514
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:10931080 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGACTCCCAC CCTGAAGCCT
  GGTTGGTCTC ACGTGAAGAT TCTTACATAT CTGCAATGTC ACCCTTTTCA AATAAGGTCA
  CCTCCCCCGG TCTTAAACGT TAGAACACAG ATGTATTCAT CTGGGTGGCA CATATCAACC
  AATTGCACTT CCTTAGGCTT TCAGTACATA AATGCCAAGA ATTCTCCAAA GCAGGAAGGG
  R
  CAAACCTCCT CCTGCGTCAC TTTGGGCCCA TGATAGGCCT CGCCTCCAGT GCTTGGGGCA
  GCAGGGCAAG AAGCCTCTGC CTCAACAAGA AAAATAAAAC AAGCACCAAA CGTCTCCAGA
  CATTATCACA TCACCTGGTA GTTTAGCCCA GGTCTCAGAG GTGCGACTCA GGGAGGGGCT
  GGGGCTGAGG CCAAGGTCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37905259	NES08657963	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	A	A	A		A	A	A	A	A	G	A	A	A
ss45597731	mCV23471071	ABI	CRAMUS_MOUSE	f	SNP	A	G					A		A
ss146009020	ENSMUSSNP5172739	ENSEMBL	ENSEMBL_Sanger	f	SNP		G							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27746514					SNP	A	G	A	A	A	A	A	A	A	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37905259	NES08657963	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:10931080 () rs orientation: forward

Symbol	Name	Function Class
Rr588827	regulatory region 588827	within coordinates
Rr588828	regulatory region 588828	868 bp proximal
Tssr36460	transcription start site region 36460	1597 bp upstream