rs27746511 SNP Detail

Summary

• ID
  rs27746511
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:10931185 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAGATGTA TTCATCTGGG
  TGGCACATAT CAACCAATTG CACTTCCTTA GGCTTTCAGT ACATAAATGC CAAGAATTCT
  CCAAAGCAGG AAGGGACAAA CCTCCTCCTG CGTCACTTTG GGCCCATGAT AGGCCTCGCC
  TCCAGTGCTT GGGGCAGCAG GGCAAGAAGC CTCTGCCTCA ACAAGAAAAA TAAAACAAGC
  R
  CCAAACGTCT CCAGACATTA TCACATCACC TGGTAGTTTA GCCCAGGTCT CAGAGGTGCG
  ACTCAGGGAG GGGCTGGGGC TGAGGCCAAG GTCAGGTCTG CCTTTTCTGT TGACTCATCC
  AAGCTGCTGT GAGATACATG GTTCGCTCGG ATGAAGCATG TCCATTTCAT AAGTCACCCA
  AGTCATTAGA GGCAGCTGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37905256	NES08657967	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27746511					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37905256	NES08657967	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:10931185 () rs orientation: forward

Symbol	Name	Function Class
Rr588827	regulatory region 588827	within coordinates
Rr588828	regulatory region 588828	763 bp proximal
Tssr36460	transcription start site region 36460	1492 bp upstream