rs27743788 SNP Detail

Summary

• ID
  rs27743788
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:13206709 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAGTCAAAT GGTCCAAGGT
  TTGCCCATTA TTTCTAATAC AGTGTTAATT GGAAATAAAA ATTAAAGAAG CAAGGACTTT
  TTAAGGAACA TTAACAGAGT CAAAGAAATG AAACGACACA GTCCACTATT TCCTGAGTCC
  ATCTGCAAAC ACCACTGTTC TAAGTGCATT GAAGATTGTG TATACTCATG AAAAAAATGC
  R
  TTATAAATTT GACTAATCTC TAAGTGTGAT TCCTAAAAGT TTTTAGACAG ACCAAAGTGT
  AGTCTGTTTC AGAGATATCT GCTACATTTT AAGTAGCTGG GATTTATTGG GTTAAACAGC
  CTCAAGCCAT CTGGAATATT CAGCTGTTCA GAATCACTCA TTTCCAGGGA GTTCTGTATA
  GTAAAGGACT TACACTGTAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37897213	NES08654876	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27743788					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37897213	NES08654876	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:13206709 () rs orientation: forward

Symbol	Name	Function Class
Rr589126	regulatory region 589126	34 bp proximal