rs27742926 SNP Detail

Summary

• ID
  rs27742926
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:12918745 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTAGTAGGA AGGAAATAAA
  GCATAAAGTC TCTTGCTTGG CTGATGACAT CTTTCCTTTC TCAGTCTCGA TTCACAGTCC
  CCCAAAGGCT CTCTAGTCAC TCCTGCTGAA AGCCGAGGCA CTGAAAACAA AGCCCTGCCC
  CTTGTTTGTT TCTCAGTTTA TCTCTGCTCT TGTACACATG TGTTTGTTCC AGGCTTAGAA
  Y
  GCAGTTCTTT GAGCATTCCA GGCTTCGCCC ATATCAGCAA GCTTGTGCTT GCTGTTCTGT
  TTTGTCTTAT TCCTTATTAT ATTATTATTC CTGCACTGTA TTGAAATGTC ACCGGTTATC
  TGTGCCATAA GGTCACTTTT CAGTTAGAAG GTCTGCCATG AACATAAAGT ATTGCTCTCT
  ATATTGTAGT ATCCATCCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37898256	NES08648172	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27742926					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37898256	NES08648172	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:12918745 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr589111	regulatory region 589111			569 bp distal
Triqk	triple QxxK/R motif containing			Intron
				Noncoding-Transcript-Variant