rs27731557 SNP Detail

Summary

• ID
  rs27731557
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:10973460 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGTAGAAG AGACAAGAAA
  AGGGGCAGTC AGACAGGACA CACTGGTTGT ACTATTCCTA CCAGTCCACC CGGTTCCAAT
  GAGCTCCTGC ATCTTGAATG AGGACTGAAG TTGGCTGCGT CCCTCTGACT GCCACATCCT
  CACACTCGGG CTTACCATGC AAATGCAGGT TCTTCAGCTT GCTCCAATGT CTCCGTCTGG
  Y
  GCAAGGATTT GGTGCACGGG GCTCTGCCAT TCACTCCATG TTGCTGGGGA CGTTAAGAAC
  AAAACAAAAC ATAACAGGCT TGGTGGTGCT AACCTGTAAT GCCAGGACTC AGGAGGTAGT
  GGCTGGGACA TCCAAATCAA GGTCATCCTG ACCTACAGCA TGGCAAAATG AAACCAATTT
  CAAAAATAAA AGACAGGGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37904998	NES08656708	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	C	C	C	C	C	C	C	C	T	C	C	C
ss146010092	ENSMUSSNP5023340	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27731557					SNP	C	C	T	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37904998	NES08656708	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:10973460 () rs orientation: forward

Symbol	Name	Function Class
Gm69307	predicted gene, 69307	within coordinates
Rr588838	regulatory region 588838	within coordinates
Rr588839	regulatory region 588839	282 bp proximal
Rr588840	regulatory region 588840	424 bp proximal
Rr588841	regulatory region 588841	1944 bp proximal