rs27731550 SNP Detail

Summary

• ID
  rs27731550
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:10974247 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGTAAGAAC GCACATGGTG
  AAAGAAGAGA ATGAACTCTG ATAGGTTGTC ACAATGTGAC CTCCATATAC GTGCTTATGC
  ACTACACGCA CACATACACA CACGCACGCG CGCGCACACA CATACATAAA TAAATAAATA
  AATAAATAAA TAAATAAATA AATAAATAAA TAAATGTGAA GAAAAAATTC AATGTCAAAG
  W
  CACACTCTGG CTTCAATCTC CTGGCCCAAG TGGTGCCCCC ACCTTAGTCT CTGAGTGGCC
  AGGGCCACAG ACATAGATAG GCTCTGTATC CACAGTTTTT TATTTACTTT TGTCTTTCTC
  TTGCTATATT TCTGAAGCTA CTAATGCTCA TTCAACCTTT GCTGGCCTGA AATTTCATTA
  GAGGCTGCGT TCAGCATCTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37904991	NES08656640	PERLEGEN	MM_PANEL2	f	SNP	T	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27731550					SNP	T	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37904991	NES08656640	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:10974247 () rs orientation: forward

Symbol	Name	Function Class
Gm69307	predicted gene, 69307	within coordinates
Rr588838	regulatory region 588838	506 bp distal
Rr588839	regulatory region 588839	405 bp distal
Rr588840	regulatory region 588840	within coordinates
Rr588841	regulatory region 588841	1157 bp proximal
Rr588842	regulatory region 588842	1915 bp proximal