rs27731534 SNP Detail

Summary

• ID
  rs27731534
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:10975255 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACAGGCCA TTACTTTTTT
  TTTTTTTTTT TTTTTTATGC TGGAGATAAA ATATAAGGCT TCCTGCATGC TAGCAAACAC
  TCTACCACCG AGCCACACTC CACCCCCACC CCCACAAATG CCTCTTTGGA TTAAAGAGGA
  CAGCACATCT GTAACTAGTG AAGACATCTT CCCCCAAGAG TCAGTAAGGC CAGATGGGTG
  Y
  AGCTACCAAA TTCAGGTCAG CAAGCAAGGT ACCAAGCTAG TCCTGTATCA GGCTGTGAGT
  TAGAAGACAA ATCAACTCTT CTCCTTTTTT GAGACAGCCT CTTTATGTGG CCCATATGCT
  GACTTTGAAC TCACTTCATA GCTGAGGTTG ACCTTGAACT CCTGATCCAC CTGCTCATCC
  TCCCAAATGC CAGGATTATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37904975	NES08656623	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27731534					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37904975	NES08656623	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:10975255 () rs orientation: forward

Symbol	Name	Function Class
Gm69307	predicted gene, 69307	within coordinates
Rr588838	regulatory region 588838	1514 bp distal
Rr588839	regulatory region 588839	1413 bp distal
Rr588840	regulatory region 588840	237 bp distal
Rr588841	regulatory region 588841	149 bp proximal
Rr588842	regulatory region 588842	907 bp proximal
Rr588843	regulatory region 588843	1489 bp proximal