rs27731403 SNP Detail

Summary

• ID
  rs27731403
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:11012311 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTTG ATTTATTACT AGTATATGTG
  R
  CAGGCAATTA GTGAATAACC TTACT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37904838	NES08655389	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	A	G		G	A	G	G	A	G	G
ss45566984	mCV23237985	ABI	CRAMUS_MOUSE	f	SNP		G				A	G
ss146010874	ENSMUSSNP1432708	ENSEMBL	ENSEMBL_Sanger	f	SNP		G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27731403					SNP	A	G	A	A	G	A	G	A	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37904838	NES08655389	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:11012311 () rs orientation: forward

Symbol	Name	Function Class
Gm46843	predicted gene, 46843	within coordinates
Rr376093	regulatory region 376093	931 bp upstream
Rr588850	regulatory region 588850	1925 bp proximal