rs27731402 SNP Detail

Summary

• ID
  rs27731402
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:11014849 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTTACTTT TTATCTCAAG
  CTCAGACACA AGATCTGGGT ACCCGGACAG GCAGGCGTGG ACAAAAGGCA CAACGCACTG
  GCTTTAGAAG TGGGGCTGCC CCAGAGCAAG GGGCCTTGGC ACGACAGTTT CCTTGTCCCA
  CTCTGGTTAG CACATGAGTA CATATAATCA TTAATTATTG CAGTTTAGTT AGTTGCTTTC
  W
  GCTTTCAGCG CTGAGGATGG AACCCAGGTC CTCACAAACA CAAGGCAAGC CCTCGACCAC
  AAGCTTTTTA CTGCATGGAG GATAGGTGTA GCTCACCTAA CAGAATGCTC ATCTGGTGCG
  CACAAAACCT GGGTTTCATC TTCATATAAC ATTAAGAGCA GATATAATAG CACATGCTTT
  TCTTTTGTTG TTGTTGTTTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37904837	NES08655291	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27731402					SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37904837	NES08655291	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:11014849 () rs orientation: forward

Symbol	Name	Function Class
Gm46843	predicted gene, 46843	within coordinates
Rr376093	regulatory region 376093	within coordinates
Rr588850	regulatory region 588850	276 bp distal
Rr588851	regulatory region 588851	within coordinates
Rr588852	regulatory region 588852	511 bp proximal
Rr588853	regulatory region 588853	1662 bp proximal