rs27730245 SNP Detail

Summary

• ID
  rs27730245
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:12774192 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATCATATG TCATGAACAA
  GAGCAGGAAG CAAATAAATT CTAGTCACTT CAAATTAGCT CACTCAACAG GCCAGGAGCA
  AGTTAATTCT TAAGCATTTA ATTCAGTCAA TTGGCACTCA AACGAGAAGA GGCAGAAAGA
  AATGGTAGGA TCTTGGCGAG GCTGTTAACC TGACCCACCC TCACAAGAGT ACAATAACAT
  K
  TATCAGTCTT TTCTCCATTC TCTAGGATTG TGTGAGTATA CATTTTTGAC TGGAAGCTTT
  TTGATCTATT GTGTTCTAGC CCTACGGGGT ATACTATTGC CATCCCCTCT CTTCCCCTCC
  CTACCACACA CTTACTTGGA CAATCTGCTT AACATATTGC ACCTTCATTC TACACTTGTA
  AAATGAAGCT ACAGCAGGAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37898868	NES08635952	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27730245					SNP	G	G	G	G	G	G	T	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37898868	NES08635952	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:12774192 () rs orientation: forward

Symbol	Name	Function Class
Gm69806	predicted gene, 69806	within coordinates
Rr589101	regulatory region 589101	615 bp proximal
Rr589102	regulatory region 589102	1692 bp proximal