rs27730243 SNP Detail

Summary

• ID
  rs27730243
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:12774371 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCACAAGAG TACAATAACA
  TGTATCAGTC TTTTCTCCAT TCTCTAGGAT TGTGTGAGTA TACATTTTTG ACTGGAAGCT
  TTTTGATCTA TTGTGTTCTA GCCCTACGGG GTATACTATT GCCATCCCCT CTCTTCCCCT
  CCCTACCACA CACTTACTTG GACAATCTGC TTAACATATT GCACCTTCAT TCTACACTTG
  W
  AAAATGAAGC TACAGCAGGA GCAAACTTCA CAGGGGCTAA GACTTATAAG GGCAGCTAAA
  GCACTTACCA AATACGGACA GACACTGGTC AGCACATCTA TGTCTGCACG CTCATGCTTC
  ACACTGAAGC ATAGAAATGT AGGAGTATGG ATTCTCTGCA GAGCCCTTGC CTTTAGTCAG
  CCATGGGACT GACTGTATGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37898866	NES08635956	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	A	T	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27730243					SNP	T	T	T	T	T	A	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37898866	NES08635956	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:12774371 () rs orientation: forward

Symbol	Name	Function Class
Gm69806	predicted gene, 69806	within coordinates
Rr589101	regulatory region 589101	436 bp proximal
Rr589102	regulatory region 589102	1513 bp proximal