rs27730237 SNP Detail

Summary

• ID
  rs27730237
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:12775542 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACTGGGAA AACACAAACT
  TGAGAAAGGG TGAGGGAGAC AAGGAATTCT ATTGCAAATG AGAATGGCGG CTGACAAGTC
  CATTAAAAAA CAACAGACCA ACATTCAAGC TGCATCTGCT GCCTTCAAAA TGTCCTTCAA
  AGGTTCGGTT CACTAACCTC TTTTAGACAA GCAAGAAGGT AGCAGAGAGG AGAGGATAGT
  K
  CCCACTGGAA GCATTCCACA TTAGTCTCTC TTCCCAGTGT GTCTGCGTCA TTATCAGAGA
  TCGGATGTTA CTTCTCTTAA GGTCACATGT GGTATTAAAG CCCTAAGTCC CAGCCATACA
  TTTCCATTGC AGTAATTGCA ATCTGTTGGC ATAAATGTGC CTTGCTGTTT TGGGTTAGTG
  TGACTGCCTT CCAACCCTGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37898860	NES08635966	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27730237					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37898860	NES08635966	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:12775542 () rs orientation: forward

Symbol	Name	Function Class
Gm69806	predicted gene, 69806	725 bp upstream
Rr589101	regulatory region 589101	235 bp distal
Rr589102	regulatory region 589102	342 bp proximal