rs27730234 SNP Detail

Summary

• ID
  rs27730234
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:12776012 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCTATAAA AATGACATGC
  CACACTTGGG GGGGGGATAC AGAAGATATT GTATTTCAGT GAACTTTATC ATCTCTTTTT
  TCTCTACTTA GAAGGGAAAT TGTGAAGCCT TCCATCTCAA TAACCCAGCT GAAATGGAGC
  CTCATAGAGG TCTCTTGAAG GGAGTTGTAA AGAGATTCTG ATGTCTGAGT AGACCAGTTG
  Y
  ACTGCCCCAA CCTTCTTTCC CACAAACATC TGCTGTGCAG CTGGAAGACA GAGAAATTGA
  TGTTTTTACA TTGGTTGTCC AGCAAGGGGG GCTAGAAACT ACAGTTCCCT TTCTGTTCAA
  ATCAATTCCC CTCTGGTACA TACTGCTAAC GAAAAATCAT TGGTAACATC TTGCCTTTGT
  ATAATAGATT TTATGTGACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37898857	NES08635972	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	T	T	T		C	T	T	T	T	C	T	C	C
ss45679690	mCV23754164	ABI	CRAMUS_MOUSE	f	SNP		T	C					T		T
ss146024500	ENSMUSSNP5120325	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27730234					SNP	T	T	C	C	T	T	T	T	C	T	T	T	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37898857	NES08635972	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:12776012 () rs orientation: forward

Symbol	Name	Function Class
Gm69806	predicted gene, 69806	1195 bp upstream
Rr589101	regulatory region 589101	705 bp distal
Rr589102	regulatory region 589102	within coordinates